PubMed Search for Other Lab Papers
Wuchty S, Rajagopala SV, Blazie SM, Parrish JR, Khuri S, Finley RL Jr, Uetz P. The Protein Interactome of Streptococcus pneumoniae and Bacterial Meta-interactomes Improve Function Predictions. mSystems. 2017 Jun 6;2(3). pii: e00019-17. doi: 10.1128/mSystems.00019-17. PMID: 28744484. MCID: PMC5513735
Atikukke*, G., Albosta*, P., Zhang, H., and Finley, Jr., R.L., A role for Drosophila Cyclin J in oogenesis revealed by genetic interactions with the piRNA pathway. Mechanisms of Development, Mech Dev. 2014 Aug;133:64-76. PMID: 24946235. Full text at PMC4177506 * These authors contributed equally to this work. Available online.
Murali, T., Pacifico, S., and Finley, Jr., R.L. Integrating the interactome and the transcriptome of Drosophila. BMC Bioinformatics, 15:177. 2014. DOI: 10.1186/1471-2105-15-17. PMID: 24913703. Full text available.
Mairiang D, Zhang H, Sodja A, Murali T, Suriyaphol P, Malasit P, Limjindaporn T, Finley RL Jr. Identification of New Protein Interactions between Dengue Fever Virus and Its Hosts, Human and Mosquito.PLoS One. 2013;8(1):e53535. doi: 10.1371/journal.pone.0053535. Epub 2013 Jan 11. PMID: 23326450 [full texct]
Yu J, Murali T, Finley RL Jr. Assigning confidence scores to protein-protein interactions. Methods Mol Biol. 2012;812:161-74. doi: 10.1007/978-1-61779-455-1_9. PMID: 22218859
Roberts GG 3rd, Parrish JR, Mangiola BA, Finley RL Jr. High-throughput yeast two-hybrid screening. Methods Mol Biol. 2012;812:39-61. doi: 10.1007/978-1-61779-455-1_3. PMID: 22218853
Guest ST, Yu J, Liu D, Hines JA, Kashat MA, Finley, Jr., RL. A protein network-guided screen for cell cycle regulators in Drosophila. BMC Syst Biol. 2011 May 6;5(1):65. PMID: 21548953. [full text]
Friedman AA, Tucker G, Singh R, Yan D, Vinayagam A, Hu Y, Binari R, Hong P, Sun X, Porto M, Pacifico S, Murali T, Finley RL Jr, Asara JM, Berger B, Perrimon N.Proteomic and functional genomic landscape of receptor tyrosine kinase and ras to extracellular signal-regulated kinase signaling. Sci Signal. 2011 Oct 25;4(196):rs10. doi: 10.1126/scisignal.2002029. PMID: 22028469
Murali T, Pacifico S, Yu J, Guest S, Roberts GG 3rd, Finley RL Jr. DroID 2011: A comprehensive, integrated resource for protein, transcription factor, RNA, and gene interactions for Drosophila. Nucleic Acids Res. 2011 Jan; 39: D736-43. PMID: 21036869. [full text] [Link to DroID]
Liu, D., Guest, S. and Finley, Jr., R.L. Why Cyclin Y?: A highly conserved cyclin with essential functions. Fly 4(4) 2010. PMID: 20699655
Liu, D. and Finley, Jr., R.L. Cyclin Y is a novel conserved cyclin essential for development in Drosophila. Genetics 184: 1025-1035. 2010. PMID: 20100936
Schwartz, A.S., Yu, J., Gardenour, K.R., Finley, Jr., R.L., and Ideker, T. Cost effective strategies for mapping the interactome. Nature Methods, 6, pp55-61, 2009. PMID: 1907925 [full text]
Yu, J., and Finley, Jr., R.L. Combining multiple positive training sets to generate confidence scores for protein-protein interactions. Bioinformatics, 25, pp105-11, 2009. PMID: 19010802 [full text]
Yu, J., Pacifico, S., Liu, G., and Finley, Jr., R.L. DroID: the Drosophila Interactions Database, a comprehensive resource for annotated gene and protein interactions. BMC Genomics, 9:461, pp1-9, (PMID: 18840285), 2008. [full text]
Rajagopala, S.V., Titz, B., Goll, J., Parrish, J.R., Wohlbold, K., McKevitt, K.T., Palzkill, T., Mori, H., Finley, Jr., R.L., and Uetz, P. Functional Genomics of bacterial motility. Molecular Systems Biology, 3,128: 1-13, 2007. PMID: 17667950
A proteome-wide protein interaction map for Campylobacter jejuni. Parrish JR, Yu J, Liu G, Hines JA, Chan JE, Mangiola BA, Zhang H, Pacifico S, Fotouhi F, Dirita VJ, Ideker T, Andrews P, Finley RL Jr. Genome Biol. 2007 Jul 5;8(7):R130 PMID: 17615063
Yeast two-hybrid contributions to interactome mapping.Parrish JR, Gulyas KD, Finley RL Jr. Curr Opin Biotechnol. 2006 Aug;17(4):387-93. Epub 2006 Jun 27. Review. PMID: 16806892
A database and tool, IM Browser, for exploring and integrating emerging gene and protein interaction data for Drosophila. Svetlana Pacifico, Guozhen Liu, Stephen Guest, Jodi R Parrish, Farshad Fotouhi and Russell L Finley Jr. BMC Bioinformatics, 7:195 doi:10.1186/1471-2105-7-195, 2006 [Full text]
From protein networks to biological systems. Uetz P, Finley RL Jr.. FEBS Lett, Mar 21;579(8):1821-7, 2005. [Medline abstract] [Full text]
High-throughput cloning of Campylobacter jejuni ORfs by in vivo recombination in Escherichia coli. Parrish JR, Limjindaporn T, Hines JA, Liu J, Liu G, Finley RL Jr.. J Proteome Res, 3(3):582-6, 2004. [Full text]
** A Drosophila protein-interaction map centered on cell-cycle regulators. Clement A Stanyon, Guozhen Liu, Bernardo A Mangiola, Nishi Patel, Loic Giot, Bing Kuang, Huamei Zhang, Jinhui Zhong and Russell L Finley Jr.. Genome Biology, 5(12):R96, 2004. [Full text] [Supplement]
A strategy for constructing large protein interaction maps using the yeast two-hybrid system: Regulated arrays and two-phase mating. Zhong, J., Huamei Zhang, Clement A. Stanyon, Gerard Tromp and Russell L. Finley, Jr. Genome Research, 13: 2691-2699, 2003. [Full text] [Supplement] [Preprint]
A protein interaction map of Drosophila melanogaster. Giot et al., Science, 302(5651), 1727-36, 2003.[Full text]
Simultaneous transfer of open reading frames into several different expression vectors. Stanyon, C.A., Limjindaporn, T., and Finley, Jr., R.L. Biotechniques, 35, 520-536, 2003. [Supplement]
Regulated expression of proteins in yeast using the MAL61-62 promotor and mating scheme to increase dynamic range. 2002. Russell L. Finley Jr., Huamei Zhang, Jinhui Zhong, and Clement Stanyon. Gene. Volume 285, Issues 1-2, 20 February 2002, Pages 49-57. [Full text]
A role for Cyclin J in the rapid nuclear division cycles of early Drosophila embryogenesis. 2000. M.G. Kolonin and R.L. Finley Jr. Developmental Biology 227, 661-672. [Full text]
Progress and potential of Drosophila protein interaction
maps. 2000. Stanyon, C.A., and Finley R.L. Jr.
Pharmacogenomics 1(4). [Abstract]
Interaction mating methods in two-hybrid systems. 2000. M.G. Kolonin and Finley R.L. Jr. Methods in Enzymology 328, 26-46. [Medline abstract] [Full text]
Targeting cyclin-dependent kinases in Drosophila with peptide aptamers. 1998. M.G. Kolonin and R.L. Finley Jr. Proc. Natl. Acad. Sci. USA 95, 14266-14271. [PNAS
Online]
Understanding gene and allele function with two-hybrid
methods. 1997. R. Brent and R.L. Finley Jr. Ann.
Rev. Gen. 31, 663-704. [Medline
abstract] [Draft
version]
Examining the function of proteins and protein networks with the yeast two-hybrid system. 1997. R.L. Finley Jr. [Full
text]
Two-hybrid analysis of genetic regulatory networks. 1997. R.L. Finley Jr and R. Brent, In "The Yeast Two-Hybrid System", eds P.L. Bartel and S. Fields, Oxford University Press, New York. [Full text]
Drosophila Cdi4 is a p21/p27/p57-like
cyclin-dependent kinase inhibitor with specificity for
cyclin E complexes. 1996. R.L. Finley Jr., B. Cohen, and R.
Brent. [Full text]
